EGJ27480.1 protein (Streptococcus porcinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EGJ27480.1

Hypothetical protein. (74 aa)

Predicted Functional Partners:

trxB

0.634

artM_2

0.600

yxeN

0.574

cycA

0.456

tcyA_1

0.417

Your Current Organism:

Streptococcus porcinus

NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGJ27480.1	artM_2	STRPO_0977	STRPO_0978	Hypothetical protein.	Arginine ABC transporter, ATP-binding protein ArtM; Identified by match to protein family HMM PF00005.	0.600
EGJ27480.1	cycA	STRPO_0977	STRPO_0975	Hypothetical protein.	D-serine/D-alanine/glycine transporter; Identified by match to protein family HMM PF00324.	0.456
EGJ27480.1	tcyA_1	STRPO_0977	STRPO_0980	Hypothetical protein.	ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.	0.417
EGJ27480.1	trxB	STRPO_0977	STRPO_0976	Hypothetical protein.	Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.	0.634
EGJ27480.1	yxeN	STRPO_0977	STRPO_0979	Hypothetical protein.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.574
artM_2	EGJ27480.1	STRPO_0978	STRPO_0977	Arginine ABC transporter, ATP-binding protein ArtM; Identified by match to protein family HMM PF00005.	Hypothetical protein.	0.600
artM_2	tcyA_1	STRPO_0978	STRPO_0980	Arginine ABC transporter, ATP-binding protein ArtM; Identified by match to protein family HMM PF00005.	ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.	0.984
artM_2	trxB	STRPO_0978	STRPO_0976	Arginine ABC transporter, ATP-binding protein ArtM; Identified by match to protein family HMM PF00005.	Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.	0.475
artM_2	yxeN	STRPO_0978	STRPO_0979	Arginine ABC transporter, ATP-binding protein ArtM; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.998
cycA	EGJ27480.1	STRPO_0975	STRPO_0977	D-serine/D-alanine/glycine transporter; Identified by match to protein family HMM PF00324.	Hypothetical protein.	0.456
cycA	trxB	STRPO_0975	STRPO_0976	D-serine/D-alanine/glycine transporter; Identified by match to protein family HMM PF00324.	Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.	0.556
tcyA_1	EGJ27480.1	STRPO_0980	STRPO_0977	ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.	Hypothetical protein.	0.417
tcyA_1	artM_2	STRPO_0980	STRPO_0978	ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.	Arginine ABC transporter, ATP-binding protein ArtM; Identified by match to protein family HMM PF00005.	0.984
tcyA_1	yxeN	STRPO_0980	STRPO_0979	ABC transporter, substrate-binding protein, family 3; Identified by match to protein family HMM PF00497.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.996
trxB	EGJ27480.1	STRPO_0976	STRPO_0977	Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.	Hypothetical protein.	0.634
trxB	artM_2	STRPO_0976	STRPO_0978	Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.	Arginine ABC transporter, ATP-binding protein ArtM; Identified by match to protein family HMM PF00005.	0.475
trxB	cycA	STRPO_0976	STRPO_0975	Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.	D-serine/D-alanine/glycine transporter; Identified by match to protein family HMM PF00324.	0.556
trxB	yxeN	STRPO_0976	STRPO_0979	Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.475
yxeN	EGJ27480.1	STRPO_0979	STRPO_0977	ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Hypothetical protein.	0.574
yxeN	artM_2	STRPO_0979	STRPO_0978	ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Arginine ABC transporter, ATP-binding protein ArtM; Identified by match to protein family HMM PF00005.	0.998