STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gatC_4PTS system protein Galactitol-specific IIC component; Identified by match to protein family HMM PF03611. (482 aa)    
Predicted Functional Partners:
EGJ27376.1
Hypothetical protein.
 
 
  0.967
EGJ26483.1
Hypothetical protein.
 
 
  0.965
EGJ26838.1
Phosphoenolpyruvate-dependent sugar PTS family porter, EIIA 2; Identified by match to protein family HMM PF00359.
 
 
  0.834
EGJ26844.1
Phosphoenolpyruvate-dependent sugar PTS family porter, EIIA 2; Identified by match to protein family HMM PF00359.
 
 
  0.823
licR_5
Phosphoenolpyruvate-dependent sugar PTS family porter, EIIA 2; Identified by match to protein family HMM PF00359.
 
 
  0.803
EGJ26771.1
PTS system protein, Lactose/Cellobiose specific IIB subunit; Identified by match to protein family HMM PF02302.
 
 
  0.719
lacB_2
Galactose-6-phosphate isomerase, LacB subunit; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01119.
 
    0.708
lacC_2
Tagatose-6-phosphate kinase; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR01231; match to protein family HMM TIGR03168; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
    0.686
lacA_2
Galactose-6-phosphate isomerase, LacA subunit; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01118.
 
    0.666
gatB_1
PTS system protein galactitol-specific enzyme IIB component family protein.
 
 
  0.661
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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