hit protein (Streptococcus porcinus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

hit

Protein hit; Identified by match to protein family HMM PF01230. (139 aa)

Predicted Functional Partners:

EGJ27498.1

0.796

rpoC

0.796

rpoZ

0.756

rpoB

0.755

EGJ28018.1

0.718

EGJ27592.1

0.718

dinG

0.671

nudF

0.593

EGJ26982.1

0.590

thyA

0.558

Your Current Organism:

Streptococcus porcinus

NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGJ26982.1	hit	STRPO_1931	STRPO_1034	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.	Protein hit; Identified by match to protein family HMM PF01230.	0.590
EGJ27498.1	hit	STRPO_1035	STRPO_1034	Hypothetical protein.	Protein hit; Identified by match to protein family HMM PF01230.	0.796
EGJ27592.1	dinG	STRPO_1873	STRPO_0656	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF04851.	Exonuclease DnaQ family/helicase DinG family; 3'-5' exonuclease.	0.983
EGJ27592.1	hit	STRPO_1873	STRPO_1034	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF04851.	Protein hit; Identified by match to protein family HMM PF01230.	0.718
EGJ27592.1	rpoB	STRPO_1873	STRPO_1514	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF04851.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.978
EGJ27592.1	rpoC	STRPO_1873	STRPO_1515	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF04851.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.875
EGJ27592.1	rpoZ	STRPO_1873	STRPO_0961	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF04851.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.978
EGJ28018.1	dinG	STRPO_0256	STRPO_0656	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271.	Exonuclease DnaQ family/helicase DinG family; 3'-5' exonuclease.	0.983
EGJ28018.1	hit	STRPO_0256	STRPO_1034	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271.	Protein hit; Identified by match to protein family HMM PF01230.	0.718
EGJ28018.1	rpoB	STRPO_0256	STRPO_1514	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.978
EGJ28018.1	rpoC	STRPO_0256	STRPO_1515	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.875
EGJ28018.1	rpoZ	STRPO_0256	STRPO_0961	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.978
dinG	EGJ27592.1	STRPO_0656	STRPO_1873	Exonuclease DnaQ family/helicase DinG family; 3'-5' exonuclease.	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF04851.	0.983
dinG	EGJ28018.1	STRPO_0656	STRPO_0256	Exonuclease DnaQ family/helicase DinG family; 3'-5' exonuclease.	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271.	0.983
dinG	hit	STRPO_0656	STRPO_1034	Exonuclease DnaQ family/helicase DinG family; 3'-5' exonuclease.	Protein hit; Identified by match to protein family HMM PF01230.	0.671
dinG	rpoB	STRPO_0656	STRPO_1514	Exonuclease DnaQ family/helicase DinG family; 3'-5' exonuclease.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.992
dinG	rpoC	STRPO_0656	STRPO_1515	Exonuclease DnaQ family/helicase DinG family; 3'-5' exonuclease.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.929
dinG	rpoZ	STRPO_0656	STRPO_0961	Exonuclease DnaQ family/helicase DinG family; 3'-5' exonuclease.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.993
hit	EGJ26982.1	STRPO_1034	STRPO_1931	Protein hit; Identified by match to protein family HMM PF01230.	Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.	0.590
hit	EGJ27498.1	STRPO_1034	STRPO_1035	Protein hit; Identified by match to protein family HMM PF01230.	Hypothetical protein.	0.796