STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhjEIdentified by match to protein family HMM PF02583. (86 aa)    
Predicted Functional Partners:
EGJ28066.1
Sigma-70, region 4; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281.
    
   0.722
rgg
Transcriptional activator, Rgg/GadR/MutR family, C-terminal domain protein; Identified by match to protein family HMM TIGR01716.
   
    0.707
frmB
Putative esterase; Identified by match to protein family HMM PF00756.
  
  
 0.674
licR_1
PRD domain protein; Identified by match to protein family HMM PF00874; match to protein family HMM PF08279.
   
    0.578
EGJ26597.1
M protein trans-acting positive regulator; Identified by match to protein family HMM PF05043; match to protein family HMM PF08270.
   
    0.578
EGJ28021.1
Identified by match to protein family HMM PF00581.
 
   
 0.566
copZ
Copper-transporter protein CopZ.
  
  
 0.478
EGJ26866.1
Peptidase C26; Identified by match to protein family HMM PF00117; match to protein family HMM PF07722.
   
    0.473
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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