STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yesO_1ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547. (452 aa)    
Predicted Functional Partners:
ugpA_1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.997
ycjP_1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.987
ycjP_2
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.973
EGJ28172.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.953
msmK
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
  
 0.943
malF
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.900
yesO_2
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
  
     0.731
nanE
Putative N-acetylmannosamine-6-phosphate epimerase; Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
     0.661
malG
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.660
nanH
Putative N-acetylneuraminate lyase; Identified by match to protein family HMM PF00701.
 
     0.598
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.