Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EGJ26709.1 | EGJ27979.1 | STRPO_1444 | STRPO_1442 | MORN repeat protein; Identified by match to protein family HMM PF02493. | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.685 |
| EGJ26709.1 | oatA | STRPO_1444 | STRPO_1445 | MORN repeat protein; Identified by match to protein family HMM PF02493. | Acyltransferase; Identified by match to protein family HMM PF01757. | 0.879 |
| EGJ26709.1 | yfkJ | STRPO_1444 | STRPO_1443 | MORN repeat protein; Identified by match to protein family HMM PF02493. | Putative low molecular weight protein-tyrosine-phosphatase PtpA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.782 |
| EGJ27319.1 | EGJ27979.1 | STRPO_1105 | STRPO_1442 | Putative bacteriocin transport accessory protein. | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.730 |
| EGJ27319.1 | yfkJ | STRPO_1105 | STRPO_1443 | Putative bacteriocin transport accessory protein. | Putative low molecular weight protein-tyrosine-phosphatase PtpA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.730 |
| EGJ27979.1 | EGJ26709.1 | STRPO_1442 | STRPO_1444 | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | MORN repeat protein; Identified by match to protein family HMM PF02493. | 0.685 |
| EGJ27979.1 | EGJ27319.1 | STRPO_1442 | STRPO_1105 | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Putative bacteriocin transport accessory protein. | 0.730 |
| EGJ27979.1 | EGJ28027.1 | STRPO_1442 | STRPO_1694 | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Putative bacteriocin transport accessory protein. | 0.730 |
| EGJ27979.1 | mraW | STRPO_1442 | STRPO_0985 | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.683 |
| EGJ27979.1 | oatA | STRPO_1442 | STRPO_1445 | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Acyltransferase; Identified by match to protein family HMM PF01757. | 0.681 |
| EGJ27979.1 | rpsQ | STRPO_1442 | STRPO_1459 | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.572 |
| EGJ27979.1 | truA | STRPO_1442 | STRPO_1759 | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.683 |
| EGJ27979.1 | trxA | STRPO_1442 | STRPO_1113 | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM PF08534; match to protein family HMM TIGR01068; Belongs to the thioredoxin family. | 0.730 |
| EGJ27979.1 | ybeY | STRPO_1442 | STRPO_0796 | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.688 |
| EGJ27979.1 | yfkJ | STRPO_1442 | STRPO_1443 | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Putative low molecular weight protein-tyrosine-phosphatase PtpA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.766 |
| EGJ28027.1 | EGJ27979.1 | STRPO_1694 | STRPO_1442 | Putative bacteriocin transport accessory protein. | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.730 |
| EGJ28027.1 | yfkJ | STRPO_1694 | STRPO_1443 | Putative bacteriocin transport accessory protein. | Putative low molecular weight protein-tyrosine-phosphatase PtpA; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.730 |
| mraW | EGJ27979.1 | STRPO_0985 | STRPO_1442 | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | Low molecular weight protein-tyrosine-phosphatase PtpA domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.683 |
| mraW | rpsQ | STRPO_0985 | STRPO_1459 | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.745 |
| mraW | truA | STRPO_0985 | STRPO_1759 | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.821 |
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