STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ27984.1Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (175 aa)    
Predicted Functional Partners:
EGJ27953.1
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
    0.747
ydaF
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.714
EGJ27099.1
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.690
EGJ27506.1
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.667
EGJ27121.1
Peptidase propeptide and YpeB domain protein; Identified by match to protein family HMM PF03413.
       0.519
EGJ27346.1
Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.
       0.443
rob
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
 
 
  0.424
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.406
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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