STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ27858.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
comYC
Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
 
 0.941
EGJ27474.1
Putative ComG operon protein 1; Identified by match to protein family HMM PF00437.
  
 0.931
EGJ27475.1
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
  
  
 0.902
EGJ26563.1
Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM TIGR02532.
  
  
 0.849
comFA
Putative ComF operon protein 1; Identified by match to protein family HMM PF00271.
   
  
 0.657
EGJ27632.1
DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
  
  
 0.621
EGJ26990.1
Hypothetical protein.
       0.569
outO
Bacterial peptidase A24, N-terminal domain protein; Identified by match to protein family HMM PF01478; match to protein family HMM PF06750.
  
  
 0.456
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.454
dprA
DNA protecting protein DprA; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732.
  
  
 0.434
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.