ntpC protein (Streptococcus porcinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ntpC

ATP synthase, subunit C; Identified by match to protein family HMM PF01992. (336 aa)

Predicted Functional Partners:

ntpI

0.999

ntpK

0.999

ntpE

0.999

ntpF

0.999

ntpA

0.999

ntpB

0.999

ntpD

0.999

atpE

0.995

bcrC

0.854

EGJ27160.1

0.854

Your Current Organism:

Streptococcus porcinus

NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGJ27160.1	ntpC	STRPO_1708	STRPO_1560	Identified by match to protein family HMM PF01569.	ATP synthase, subunit C; Identified by match to protein family HMM PF01992.	0.854
EGJ27160.1	ntpF	STRPO_1708	STRPO_1561	Identified by match to protein family HMM PF01569.	ATP synthase, subunit F; Identified by match to protein family HMM PF01990.	0.798
EGJ27160.1	ntpI	STRPO_1708	STRPO_1557	Identified by match to protein family HMM PF01569.	V-type sodium ATPase, I subunit; Identified by match to protein family HMM PF01496.	0.752
atpE	ntpA	STRPO_0611	STRPO_1562	ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	ATP synthase alpha/beta chain, C-terminal domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.996
atpE	ntpB	STRPO_0611	STRPO_1563	ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	ATP synthase alpha/beta chain, C-terminal domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.	0.994
atpE	ntpC	STRPO_0611	STRPO_1560	ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	ATP synthase, subunit C; Identified by match to protein family HMM PF01992.	0.995
atpE	ntpD	STRPO_0611	STRPO_1564	ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.993
atpE	ntpE	STRPO_0611	STRPO_1559	ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	V-type sodium ATP synthase, subunit E family protein.	0.994
atpE	ntpF	STRPO_0611	STRPO_1561	ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	ATP synthase, subunit F; Identified by match to protein family HMM PF01990.	0.988
atpE	ntpI	STRPO_0611	STRPO_1557	ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	V-type sodium ATPase, I subunit; Identified by match to protein family HMM PF01496.	0.996
atpE	ntpK	STRPO_0611	STRPO_1558	ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	V-type sodium ATPase, K subunit; Identified by match to protein family HMM PF00137; Belongs to the V-ATPase proteolipid subunit family.	0.434
bcrC	ntpC	STRPO_0877	STRPO_1560	Identified by match to protein family HMM PF01569.	ATP synthase, subunit C; Identified by match to protein family HMM PF01992.	0.854
bcrC	ntpF	STRPO_0877	STRPO_1561	Identified by match to protein family HMM PF01569.	ATP synthase, subunit F; Identified by match to protein family HMM PF01990.	0.798
bcrC	ntpI	STRPO_0877	STRPO_1557	Identified by match to protein family HMM PF01569.	V-type sodium ATPase, I subunit; Identified by match to protein family HMM PF01496.	0.752
ntpA	atpE	STRPO_1562	STRPO_0611	ATP synthase alpha/beta chain, C-terminal domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	ATP synthase subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.996
ntpA	ntpB	STRPO_1562	STRPO_1563	ATP synthase alpha/beta chain, C-terminal domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	ATP synthase alpha/beta chain, C-terminal domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.	0.999
ntpA	ntpC	STRPO_1562	STRPO_1560	ATP synthase alpha/beta chain, C-terminal domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	ATP synthase, subunit C; Identified by match to protein family HMM PF01992.	0.999
ntpA	ntpD	STRPO_1562	STRPO_1564	ATP synthase alpha/beta chain, C-terminal domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
ntpA	ntpE	STRPO_1562	STRPO_1559	ATP synthase alpha/beta chain, C-terminal domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	V-type sodium ATP synthase, subunit E family protein.	0.999
ntpA	ntpF	STRPO_1562	STRPO_1561	ATP synthase alpha/beta chain, C-terminal domain protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	ATP synthase, subunit F; Identified by match to protein family HMM PF01990.	0.999