sorC protein (Streptococcus porcinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sorC

Sugar-binding domain protein; Identified by match to protein family HMM PF04198. (326 aa)

Predicted Functional Partners:

dhaK

0.847

ulaR

0.835

glpO

0.730

gpsA

0.702

dhaQ

0.667

csdA

0.622

hpdB

0.584

lyx

0.548

gldA

0.520

dhaL

0.470

Your Current Organism:

Streptococcus porcinus

NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
csdA	hpdB	STRPO_1565	STRPO_1571	Glycyl-radical enzyme activating protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494.	Formate C-acetyltransferase; Identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774.	0.929
csdA	sorC	STRPO_1565	STRPO_1567	Glycyl-radical enzyme activating protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494.	Sugar-binding domain protein; Identified by match to protein family HMM PF04198.	0.622
csdA	ulaR	STRPO_1565	STRPO_1566	Glycyl-radical enzyme activating protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494.	Transcriptional regulator, DeoR family; Identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279.	0.656
dhaK	dhaL	STRPO_0758	STRPO_0757	Dihydroxyacetone kinase, DhaK subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363.	Dihydroxyacetone kinase, L subunit; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365.	0.998
dhaK	dhaQ	STRPO_0758	STRPO_0760	Dihydroxyacetone kinase, DhaK subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363.	Putative dihydroxyacetone kinase DhaK1b subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02362.	0.599
dhaK	gldA	STRPO_0758	STRPO_1573	Dihydroxyacetone kinase, DhaK subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363.	Glycerol dehydrogenase; Identified by match to protein family HMM PF00465; match to protein family HMM PF01761.	0.748
dhaK	glpO	STRPO_0758	STRPO_0996	Dihydroxyacetone kinase, DhaK subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363.	FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266.	0.736
dhaK	gpsA	STRPO_0758	STRPO_1241	Dihydroxyacetone kinase, DhaK subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363.	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF03807; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.710
dhaK	sorC	STRPO_0758	STRPO_1567	Dihydroxyacetone kinase, DhaK subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363.	Sugar-binding domain protein; Identified by match to protein family HMM PF04198.	0.847
dhaL	dhaK	STRPO_0757	STRPO_0758	Dihydroxyacetone kinase, L subunit; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365.	Dihydroxyacetone kinase, DhaK subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363.	0.998
dhaL	dhaQ	STRPO_0757	STRPO_0760	Dihydroxyacetone kinase, L subunit; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365.	Putative dihydroxyacetone kinase DhaK1b subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02362.	0.989
dhaL	gldA	STRPO_0757	STRPO_1573	Dihydroxyacetone kinase, L subunit; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365.	Glycerol dehydrogenase; Identified by match to protein family HMM PF00465; match to protein family HMM PF01761.	0.771
dhaL	glpO	STRPO_0757	STRPO_0996	Dihydroxyacetone kinase, L subunit; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365.	FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266.	0.736
dhaL	gpsA	STRPO_0757	STRPO_1241	Dihydroxyacetone kinase, L subunit; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365.	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF03807; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.710
dhaL	sorC	STRPO_0757	STRPO_1567	Dihydroxyacetone kinase, L subunit; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365.	Sugar-binding domain protein; Identified by match to protein family HMM PF04198.	0.470
dhaQ	dhaK	STRPO_0760	STRPO_0758	Putative dihydroxyacetone kinase DhaK1b subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02362.	Dihydroxyacetone kinase, DhaK subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363.	0.599
dhaQ	dhaL	STRPO_0760	STRPO_0757	Putative dihydroxyacetone kinase DhaK1b subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02362.	Dihydroxyacetone kinase, L subunit; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365.	0.989
dhaQ	gldA	STRPO_0760	STRPO_1573	Putative dihydroxyacetone kinase DhaK1b subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02362.	Glycerol dehydrogenase; Identified by match to protein family HMM PF00465; match to protein family HMM PF01761.	0.555
dhaQ	glpO	STRPO_0760	STRPO_0996	Putative dihydroxyacetone kinase DhaK1b subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02362.	FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266.	0.534
dhaQ	gpsA	STRPO_0760	STRPO_1241	Putative dihydroxyacetone kinase DhaK1b subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02362.	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF03807; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.488