STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gatB_1PTS system protein galactitol-specific enzyme IIB component family protein. (94 aa)    
Predicted Functional Partners:
licR_5
Phosphoenolpyruvate-dependent sugar PTS family porter, EIIA 2; Identified by match to protein family HMM PF00359.
 
 
  0.996
gatC-2
Galactitol permease IIC component; Identified by match to protein family HMM PF03611.
 
 
  0.996
licR_6
PRD domain protein; Identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279.
 
 
 0.967
EGJ26771.1
PTS system protein, Lactose/Cellobiose specific IIB subunit; Identified by match to protein family HMM PF02302.
  
  
  0.925
EGJ27167.1
PRD domain protein; Identified by match to protein family HMM PF00874.
 
 
 0.874
EGJ27965.1
PTS system protein Galactitol-specific IIC component; Identified by match to protein family HMM PF03611.
 
 
  0.870
tpiA_2
Triose-phosphate isomerase; Identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419.
 
     0.869
EGJ26844.1
Phosphoenolpyruvate-dependent sugar PTS family porter, EIIA 2; Identified by match to protein family HMM PF00359.
 
 
  0.861
EGJ27545.1
PRD domain protein; Identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279.
 
 
 0.859
EGJ27197.1
Putative secondary thiamine-phosphate synthase enzyme.
 
     0.856
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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