STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ27664.1CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. (315 aa)    
Predicted Functional Partners:
EGJ28252.1
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
    0.617
sigV
Sigma-70 region 2; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.572
EGJ26608.1
Histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
 
     0.566
nreC
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
     0.556
EGJ26664.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
  0.533
EGJ27426.1
Hypothetical protein.
       0.516
EGJ28166.1
YcaO-like family; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR03604.
  
  
 0.461
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.