STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ27704.1DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. (359 aa)    
Predicted Functional Partners:
EGJ27405.1
Putative membrane protein.
 
     0.816
cinA
Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.
    
 0.801
EGJ26757.1
Putative bacitracin ABC transporter, ATP-binding protein BcrA; Identified by match to protein family HMM PF00005.
 
     0.650
EGJ28078.1
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
 
     0.569
entB
Identified by match to protein family HMM PF00857.
       0.464
EGJ26634.1
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
    0.457
EGJ28064.1
Transporter, auxin efflux carrier family protein; Identified by match to protein family HMM PF03547.
  
     0.408
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
  
  
  0.400
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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