STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
murM_3Identified by match to protein family HMM PF02388. (419 aa)    
Predicted Functional Partners:
murN
Identified by match to protein family HMM PF02388; overlaps another CDS with the same product name.
 
  
0.603
EGJ26654.1
Mur ligase middle domain protein; Identified by match to protein family HMM PF08245; match to protein family HMM PF08353.
 
 
 0.541
EGJ27801.1
CobB/CobQ-like glutamine amidotransferase domain protein; Identified by match to protein family HMM PF07685.
  
  
  0.498
murG
Glycosyltransferase family 28 N-terminal domain protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
   
 
 0.441
EGJ28120.1
Identified by match to protein family HMM PF06279.
  
     0.436
saeR
Response regulator SaeR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.424
saeS
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
       0.424
EGJ26422.1
CHAP domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF05257.
  
   
 0.415
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.