STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sagHABC-2 type transporter; Identified by match to protein family HMM PF01061. (375 aa)    
Predicted Functional Partners:
sagI
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
 
 0.972
sagG
ABC transporter, ATP-binding protein SagG; Identified by match to protein family HMM PF00005.
 
 
 0.956
EGJ28166.1
YcaO-like family; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR03604.
 
  
 0.935
sagB
Streptolysin associated protein SagB; Identified by match to protein family HMM TIGR03605.
 
  
 0.840
EGJ26626.1
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
 
 0.818
EGJ27456.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.815
EGJ27830.1
Hypothetical protein.
     
 0.754
EGJ27502.1
Hypothetical protein.
  
   0.753
EGJ27496.1
Identified by match to protein family HMM PF01261.
  
     0.742
sagC
Bacteriocin biosynthesis cyclodehydratase, SagC; Identified by match to protein family HMM TIGR03603.
     
 0.742
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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