STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCDGlycine betaine/carnitine/choline transport system permease protein opuCD; Identified by match to protein family HMM PF00528. (220 aa)    
Predicted Functional Partners:
opuCC
Glycine betaine/carnitine/choline-binding protein; Identified by match to protein family HMM PF04069.
 
 0.999
opuBA
Choline ABC transporter, ATP-binding protein OpuBA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.
 0.993
proV_3
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 0.962
opuBB
Choline transport system permease protein opuBB; Identified by match to protein family HMM PF00528.
 
 
 
0.950
opuAC
ABC transporter, quaternary amine uptake transporter family, substrate-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.
 
 
0.865
opuCC_1
ABC transporter, quaternary amine uptake transporter family, substrate-binding protein; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.
 
 
0.856
proV
Glycine betaine/L-proline ABC transporter, ATP-binding protein ProV; Identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186.
 
 0.493
polC
DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
    0.443
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.