STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ27059.1DAK2 domain fusion protein YloV; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599. (554 aa)    
Predicted Functional Partners:
EGJ27884.1
EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
   0.996
degV_2
EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
   0.992
degV_1
EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
   0.983
EGJ27533.1
Identified by match to protein family HMM PF03780.
 
  
 0.981
EGJ27567.1
EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
 
   0.949
rpmB
Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
       0.541
qmcA
SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145.
       0.517
EGJ27282.1
Identified by match to protein family HMM PF03780.
 
  
 0.446
polC
DNA polymerase III, alpha subunit, Gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
     0.404
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.