STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacA_3Putative phage DNA packaging protein; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family. (396 aa)    
Predicted Functional Partners:
EGJ27225.1
CHAP domain protein; Identified by match to protein family HMM PF05257; match to protein family HMM PF08481.
   
 
 0.789
dacA_2
Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; overlaps another CDS with the same product name; Belongs to the peptidase S11 family.
 
    
0.703
dacA_1
Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; overlaps another CDS with the same product name; Belongs to the peptidase S11 family.
 
    
0.693
penA
Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
  
 
 0.514
pbpX
Penicillin-binding protein 2X; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.
  
 
 0.470
EGJ27740.1
Glycosyl hydrolase family 25; Identified by match to protein family HMM PF01183.
  
  
  0.458
stk1
Putative serine/threonine-protein kinase PrkC; Identified by match to protein family HMM PF00069; match to protein family HMM PF01163; match to protein family HMM PF03793.
   
 
 0.454
EGJ27978.1
Hypothetical protein.
  
  
  0.429
EGJ27076.1
CHAP domain protein; Identified by match to protein family HMM PF05257; match to protein family HMM PF08460.
  
  
  0.410
EGJ28072.1
Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.
     
 0.400
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.