STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdAHistidine kinase; Identified by match to protein family HMM PF06580. (556 aa)    
Predicted Functional Partners:
EGJ26586.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.
 
 
 0.985
EGJ27868.1
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
 
 
   0.959
rbsB
D-ribose-binding periplasmic protein; Identified by match to protein family HMM PF00532.
  
 
 0.887
lytT
Sensory transduction protein LytT; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397.
 
 
 0.883
yehU
LytS/YhcK-type transmembrane receptor domain protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694.
 
  
 
0.793
araC_2
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
  
  
 0.777
EGJ27990.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
  
  0.751
modB
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.712
malK
Putative lactose ABC transporter, ATP-binding protein LacK; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
       0.590
EGJ26846.1
Putative CTP pyrophosphohydrolase; Identified by match to protein family HMM PF00293.
       0.517
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.