STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsDD-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (132 aa)    
Predicted Functional Partners:
rbsB
D-ribose-binding periplasmic protein; Identified by match to protein family HMM PF00532.
 
  
 0.994
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.989
rbsA
Ribose transport, ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
  
 0.987
rbsC
Ribose transport system permease protein RbsC; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.981
rbsR
Putative ribose operon repressor; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
 
  
 0.838
iolC
Carbohydrate kinase, PfkB family; Identified by match to protein family HMM PF00294.
  
  
 0.709
EGJ27088.1
Putative rhamnulose-1-phosphate aldolase; Identified by match to protein family HMM PF00596.
  
    0.458
yutD
Identified by match to protein family HMM PF06265.
       0.432
rlmN
23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
     
 0.431
yfkN_1
Identified by match to protein family HMM PF00149; Belongs to the 5'-nucleotidase family.
       0.424
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.