STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yutDIdentified by match to protein family HMM PF06265. (204 aa)    
Predicted Functional Partners:
yfkN_1
Identified by match to protein family HMM PF00149; Belongs to the 5'-nucleotidase family.
 
    0.884
rlmN
23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.852
EGJ26719.1
Identified by match to protein family HMM PF04892.
       0.852
rpoE
DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
     0.732
EGJ27442.1
Identified by match to protein family HMM PF06949; Belongs to the UPF0473 family.
  
     0.722
ylbL
PDZ domain protein.
 
     0.658
yutF
HAD hydrolase, TIGR01457 family; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460.
 
  
 0.650
yqeH
Ribosome biogenesis GTPase YqeH; Identified by match to protein family HMM PF01926; match to protein family HMM TIGR03597.
  
     0.637
dnaI
Primosomal protein DnaI; Identified by match to protein family HMM PF07319.
  
     0.618
yabA
Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
     0.608
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.