Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EGJ27207.1 | EGJ28295.1 | STRPO_1966 | STRPO_1967 | GIY-YIG catalytic domain protein; Identified by match to protein family HMM PF01541. | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | 0.701 |
| EGJ27207.1 | rsmI | STRPO_1966 | STRPO_0847 | GIY-YIG catalytic domain protein; Identified by match to protein family HMM PF01541. | S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.432 |
| EGJ27632.1 | EGJ28295.1 | STRPO_1970 | STRPO_1967 | DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | 0.470 |
| EGJ27632.1 | comEA | STRPO_1970 | STRPO_1969 | DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | ComE operon protein 1; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | 0.920 |
| EGJ27632.1 | plsC | STRPO_1970 | STRPO_1968 | DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | Acyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01553. | 0.666 |
| EGJ28257.1 | EGJ28295.1 | STRPO_1359 | STRPO_1967 | DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | 0.404 |
| EGJ28257.1 | tmcAL | STRPO_1359 | STRPO_0930 | DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34. | 0.705 |
| EGJ28295.1 | EGJ27207.1 | STRPO_1967 | STRPO_1966 | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | GIY-YIG catalytic domain protein; Identified by match to protein family HMM PF01541. | 0.701 |
| EGJ28295.1 | EGJ27632.1 | STRPO_1967 | STRPO_1970 | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | 0.470 |
| EGJ28295.1 | EGJ28257.1 | STRPO_1967 | STRPO_1359 | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. | 0.404 |
| EGJ28295.1 | comEA | STRPO_1967 | STRPO_1969 | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | ComE operon protein 1; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | 0.463 |
| EGJ28295.1 | plsC | STRPO_1967 | STRPO_1968 | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | Acyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01553. | 0.573 |
| EGJ28295.1 | ppdK | STRPO_1967 | STRPO_1076 | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | Pyruvate, phosphate dikinase; Identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01828; Belongs to the PEP-utilizing enzyme family. | 0.646 |
| EGJ28295.1 | rnr | STRPO_1967 | STRPO_0781 | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.451 |
| EGJ28295.1 | rsmI | STRPO_1967 | STRPO_0847 | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.522 |
| EGJ28295.1 | tmcAL | STRPO_1967 | STRPO_0930 | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34. | 0.720 |
| comEA | EGJ27632.1 | STRPO_1969 | STRPO_1970 | ComE operon protein 1; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | 0.920 |
| comEA | EGJ28295.1 | STRPO_1969 | STRPO_1967 | ComE operon protein 1; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily. | 0.463 |
| comEA | plsC | STRPO_1969 | STRPO_1968 | ComE operon protein 1; Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | Acyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01553. | 0.865 |
| plsC | EGJ27632.1 | STRPO_1968 | STRPO_1970 | Acyltransferase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01553. | DNA internalization competence protein ComEC/Rec2-like protein; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | 0.666 |
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