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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uidA_2Glycosyl hydrolase family 2, TIM barrel domain protein; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family. (596 aa)    
Predicted Functional Partners:
uxaC
Glucuronate isomerase; Identified by match to protein family HMM PF02614.
 
 
 0.932
uidB
Putative ATP synthase F0, A subunit.
 
  
 0.860
iolC
Carbohydrate kinase, PfkB family; Identified by match to protein family HMM PF00294.
 
  
 0.858
lacE
PTS system protein, lactose-specific IIC component; Identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853.
   
 
 0.821
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.805
galE
UDP-glucose 4-epimerase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.800
EGJ26423.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.792
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.791
EGJ26871.1
Putative cross-wall-targeting lipoprotein signal; Identified by match to protein family HMM PF00746; match to protein family HMM PF08363; match to protein family HMM TIGR01167; match to protein family HMM TIGR03726.
    
 0.762
araD
L-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596.
   
 
 0.703
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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