STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ28317.1Identified by match to protein family HMM PF02534. (606 aa)    
Predicted Functional Partners:
EGJ28009.1
Putative membrane protein.
 
     0.931
EGJ27481.1
Hypothetical protein.
 
  
 0.928
EGJ27261.1
HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.
   
 
 0.896
EGJ27258.1
Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF00176; match to protein family HMM PF02384; match to protein family HMM PF04851.
 
    0.823
EGJ27534.1
Relaxase/mobilization nuclease domain protein; Identified by match to protein family HMM PF03432.
 
   
 0.817
EGJ27521.1
Hypothetical protein.
       0.796
EGJ26815.1
Hypothetical protein.
 
    0.793
EGJ27871.1
Replication initiator protein A, N-terminal domain protein; Identified by match to protein family HMM PF06970.
 
     0.760
EGJ27151.1
Hypothetical protein.
       0.751
EGJ26422.1
CHAP domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF05257.
 
     0.658
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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