STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ28141.1Hypothetical protein. (41 aa)    
Predicted Functional Partners:
EGJ26992.1
Putative translation elongation factor G; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231.
 
     0.837
EGJ27693.1
Sigma-70, region 4; Identified by match to protein family HMM PF08281.
  
    0.776
EGJ28066.1
Sigma-70, region 4; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281.
  
     0.774
EGJ27262.1
Plasmid recombination enzyme; Identified by match to protein family HMM PF01076.
  
     0.773
EGJ28096.1
Hypothetical protein.
  
     0.770
EGJ27527.1
Putative TnpX site-specific recombinase; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
  
     0.769
EGJ28316.1
Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180.
  
     0.765
EGJ27186.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05895.
  
     0.704
EGJ27258.1
Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF00176; match to protein family HMM PF02384; match to protein family HMM PF04851.
 
     0.587
EGJ26966.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
    0.409
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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