STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGJ26815.1Hypothetical protein. (303 aa)    
Predicted Functional Partners:
EGJ27258.1
Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF00176; match to protein family HMM PF02384; match to protein family HMM PF04851.
     0.978
hsdS2
Hypothetical protein.
  
 
 0.971
EGJ27527.1
Putative TnpX site-specific recombinase; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
 
     0.841
EGJ27481.1
Hypothetical protein.
 
     0.797
EGJ28317.1
Identified by match to protein family HMM PF02534.
 
    0.793
EGJ27534.1
Relaxase/mobilization nuclease domain protein; Identified by match to protein family HMM PF03432.
 
     0.779
EGJ28009.1
Putative membrane protein.
 
     0.753
EGJ27634.1
Hypothetical protein.
     
 0.640
EGJ28316.1
Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180.
 
    0.638
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
 
 0.622
Your Current Organism:
Streptococcus porcinus
NCBI taxonomy Id: 873448
Other names: S. porcinus str. Jelinkova 176, Streptococcus porcinus str. Jelinkova 176, Streptococcus porcinus strain Jelinkova 176
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