EHI75386.1 protein (Streptococcus criceti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EHI75386.1

Amino acid permease family protein. (450 aa)

Predicted Functional Partners:

aguA

0.966

ptcA

0.911

arcC

0.571

EHI74504.1

0.521

gtfA-2

0.521

dexB

0.521

EHI74873.1

0.521

EHI73425.1

0.466

EHI74021.1

0.466

aroE

0.447

Your Current Organism:

Streptococcus criceti

NCBI taxonomy Id: 873449
Other names: S. criceti HS-6, Streptococcus criceti HS-6, Streptococcus criceti str. HS-6, Streptococcus criceti strain HS-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHI73425.1	EHI74021.1	STRCR_0226	STRCR_0227	Transcriptional regulator, LuxR family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.903
EHI73425.1	EHI75386.1	STRCR_0226	STRCR_0229	Transcriptional regulator, LuxR family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Amino acid permease family protein.	0.466
EHI73425.1	aguA	STRCR_0226	STRCR_0230	Transcriptional regulator, LuxR family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Putative agmatine deiminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.498
EHI73425.1	ptcA	STRCR_0226	STRCR_0228	Transcriptional regulator, LuxR family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Putrescine carbamoyltransferase; Catalyzes the phosphorolysis of N-carbamoylputrescine to form carbamoyl phosphate and putrescine. Is involved in the degradation pathway of the polyamine agmatine.	0.538
EHI74021.1	EHI73425.1	STRCR_0227	STRCR_0226	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Transcriptional regulator, LuxR family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.903
EHI74021.1	EHI75386.1	STRCR_0227	STRCR_0229	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Amino acid permease family protein.	0.466
EHI74021.1	aguA	STRCR_0227	STRCR_0230	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Putative agmatine deiminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.498
EHI74021.1	ptcA	STRCR_0227	STRCR_0228	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Putrescine carbamoyltransferase; Catalyzes the phosphorolysis of N-carbamoylputrescine to form carbamoyl phosphate and putrescine. Is involved in the degradation pathway of the polyamine agmatine.	0.538
EHI74504.1	EHI74873.1	STRCR_0268	STRCR_2296	Alpha amylase family protein.	Cytoplasmic alpha-amylase.	0.707
EHI74504.1	EHI75386.1	STRCR_0268	STRCR_0229	Alpha amylase family protein.	Amino acid permease family protein.	0.521
EHI74504.1	gtfA-2	STRCR_0268	STRCR_1233	Alpha amylase family protein.	Sucrose phosphorylase.	0.792
EHI74873.1	EHI74504.1	STRCR_2296	STRCR_0268	Cytoplasmic alpha-amylase.	Alpha amylase family protein.	0.707
EHI74873.1	EHI75386.1	STRCR_2296	STRCR_0229	Cytoplasmic alpha-amylase.	Amino acid permease family protein.	0.521
EHI74873.1	dexB	STRCR_2296	STRCR_1235	Cytoplasmic alpha-amylase.	Glucan 1,6-alpha-glucosidase.	0.706
EHI74873.1	gtfA-2	STRCR_2296	STRCR_1233	Cytoplasmic alpha-amylase.	Sucrose phosphorylase.	0.426
EHI75386.1	EHI73425.1	STRCR_0229	STRCR_0226	Amino acid permease family protein.	Transcriptional regulator, LuxR family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.466
EHI75386.1	EHI74021.1	STRCR_0229	STRCR_0227	Amino acid permease family protein.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.466
EHI75386.1	EHI74504.1	STRCR_0229	STRCR_0268	Amino acid permease family protein.	Alpha amylase family protein.	0.521
EHI75386.1	EHI74873.1	STRCR_0229	STRCR_2296	Amino acid permease family protein.	Cytoplasmic alpha-amylase.	0.521
EHI75386.1	aguA	STRCR_0229	STRCR_0230	Amino acid permease family protein.	Putative agmatine deiminase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.966