Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppCOligopeptide ABC transporter, permease protein OppC. (343 aa)    
Predicted Functional Partners:
oppB
Oligopeptide ABC transporter, permease protein OppB.
 0.999
oppD
Oligopeptide ABC transporter, ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 0.999
oppF
Oligopeptide ABC transporter, ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 0.999
oppA
Oligopeptide ABC transporter, oligopeptide-binding protein OppA.
 
 
 0.997
EHI73613.1
ABC transporter, ATP-binding protein.
  
 0.805
EHI74200.1
Hypothetical protein.
  
 0.794
livG
Branched-chain amino acid ABC transporter, ATP-binding protein LivG.
    
 0.505
stk
Serine/threonine protein kinase Stk1.
   
  0.423
Your Current Organism:
Streptococcus criceti
NCBI taxonomy Id: 873449
Other names: S. criceti HS-6, Streptococcus criceti HS-6, Streptococcus criceti str. HS-6, Streptococcus criceti strain HS-6
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