Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EHI74033.1Putative choline ABC transporter, ATP-binding protein. (242 aa)    
Predicted Functional Partners:
EHI73569.1
Putative choline ABC transporter, permease/choline-binding protein.
 
 0.999
EHI75556.1
An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
 
 0.977
EHI74565.1
Glycine betaine/carnitine/choline ABC transporter, permease family protein.
 
 0.970
opuCB
Glycine betaine/L-proline ABC transporter, permease protein.
 
 0.947
EHI73319.1
Glycine betaine/L-proline ABC transporter, ATP-binding family protein.
     
  0.911
EHI74768.1
Efflux ABC transporter, permease/ATP-binding protein.
 
     
0.859
EHI74456.1
Hypothetical protein.
  
    0.814
EHI75544.1
Hypothetical protein.
  
    0.795
EHI75145.1
Hypothetical protein.
  
    0.777
EHI74776.1
Transcriptional regulator, MarR family.
  
    0.697
Your Current Organism:
Streptococcus criceti
NCBI taxonomy Id: 873449
Other names: S. criceti HS-6, Streptococcus criceti HS-6, Streptococcus criceti str. HS-6, Streptococcus criceti strain HS-6
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