Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pepFOligoendopeptidase F, plasmid. (603 aa)    
Predicted Functional Partners:
coiA
Competence protein CoiA.
     
 0.813
EHI74674.1
Peptidase M24 family protein; Belongs to the peptidase M24B family.
      
 0.812
pepV
Dipeptidase PepV.
     
 0.714
pepN
Membrane alanyl aminopeptidase.
      
 0.708
pepQ
Xaa-Pro dipeptidase; Belongs to the peptidase M24B family.
      
 0.708
EHI74552.1
Hypothetical protein; Identified by glimmer; putative.
       0.675
typA
GTP-binding protein TypA.
       0.675
map
Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
     
 0.674
pepO
Endopeptidase O.
      
 0.545
prsA
Putative foldase protein PrsA; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins.
       0.455
Your Current Organism:
Streptococcus criceti
NCBI taxonomy Id: 873449
Other names: S. criceti HS-6, Streptococcus criceti HS-6, Streptococcus criceti str. HS-6, Streptococcus criceti strain HS-6
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