Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHI73322.1Transcriptional regulator, DeoR family. (246 aa)    
Predicted Functional Partners:
EHI74824.1
Hypothetical protein.
 
    0.695
rpiB
Ribose-5-phosphate isomerase B.
    
 0.656
bglP
PTS system beta-glucoside-specific EIIBCA component.
  
  
 0.629
fruK
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.602
fruA
PTS system, fructose specific IIABC component.
  
  
 0.599
EHI75035.1
Putative ribulose-phosphate 3-epimerase.
  
    0.590
EHI74135.1
Tagatose-6-phosphate kinase family protein; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.589
Your Current Organism:
Streptococcus criceti
NCBI taxonomy Id: 873449
Other names: S. criceti HS-6, Streptococcus criceti HS-6, Streptococcus criceti str. HS-6, Streptococcus criceti strain HS-6
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