EHI75211.1 protein (Streptococcus criceti) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EHI75211.1

Aspartate aminotransferase. (393 aa)

Predicted Functional Partners:

EHI74326.1

0.919

EHI74308.1

0.915

asnA

0.911

EHI75104.1

0.888

pheA

0.885

EHI74700.1

0.870

dinG

0.790

EHI75284.1

0.781

ldh

0.717

EHI73993.1

0.717

Your Current Organism:

Streptococcus criceti

NCBI taxonomy Id: 873449
Other names: S. criceti HS-6, Streptococcus criceti HS-6, Streptococcus criceti str. HS-6, Streptococcus criceti strain HS-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHI73993.1	EHI74326.1	STRCR_1382	STRCR_2079	L-2-hydroxyisocaproate dehydrogenase; Belongs to the LDH/MDH superfamily.	Hydrolase, carbon-nitrogen family.	0.653
EHI73993.1	EHI75211.1	STRCR_1382	STRCR_1982	L-2-hydroxyisocaproate dehydrogenase; Belongs to the LDH/MDH superfamily.	Aspartate aminotransferase.	0.717
EHI73993.1	EHI75284.1	STRCR_1382	STRCR_1990	L-2-hydroxyisocaproate dehydrogenase; Belongs to the LDH/MDH superfamily.	Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein.	0.424
EHI74308.1	EHI74326.1	STRCR_0855	STRCR_2079	Asparaginase family protein.	Hydrolase, carbon-nitrogen family.	0.726
EHI74308.1	EHI75211.1	STRCR_0855	STRCR_1982	Asparaginase family protein.	Aspartate aminotransferase.	0.915
EHI74308.1	asnA	STRCR_0855	STRCR_1069	Asparaginase family protein.	Putative Aspartate--ammonia ligase.	0.934
EHI74326.1	EHI73993.1	STRCR_2079	STRCR_1382	Hydrolase, carbon-nitrogen family.	L-2-hydroxyisocaproate dehydrogenase; Belongs to the LDH/MDH superfamily.	0.653
EHI74326.1	EHI74308.1	STRCR_2079	STRCR_0855	Hydrolase, carbon-nitrogen family.	Asparaginase family protein.	0.726
EHI74326.1	EHI75211.1	STRCR_2079	STRCR_1982	Hydrolase, carbon-nitrogen family.	Aspartate aminotransferase.	0.919
EHI74326.1	asnA	STRCR_2079	STRCR_1069	Hydrolase, carbon-nitrogen family.	Putative Aspartate--ammonia ligase.	0.581
EHI74326.1	ldh	STRCR_2079	STRCR_1310	Hydrolase, carbon-nitrogen family.	L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.	0.653
EHI74700.1	EHI75104.1	STRCR_1981	STRCR_1983	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.846
EHI74700.1	EHI75211.1	STRCR_1981	STRCR_1982	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Aspartate aminotransferase.	0.870
EHI74700.1	dinG	STRCR_1981	STRCR_1984	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; 3'-5' exonuclease.	0.651
EHI75104.1	EHI74700.1	STRCR_1983	STRCR_1981	Hypothetical protein.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.846
EHI75104.1	EHI75211.1	STRCR_1983	STRCR_1982	Hypothetical protein.	Aspartate aminotransferase.	0.888
EHI75104.1	dinG	STRCR_1983	STRCR_1984	Hypothetical protein.	Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; 3'-5' exonuclease.	0.829
EHI75211.1	EHI73993.1	STRCR_1982	STRCR_1382	Aspartate aminotransferase.	L-2-hydroxyisocaproate dehydrogenase; Belongs to the LDH/MDH superfamily.	0.717
EHI75211.1	EHI74308.1	STRCR_1982	STRCR_0855	Aspartate aminotransferase.	Asparaginase family protein.	0.915
EHI75211.1	EHI74326.1	STRCR_1982	STRCR_2079	Aspartate aminotransferase.	Hydrolase, carbon-nitrogen family.	0.919