Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lytSSensor protein LytS. (583 aa)    
Predicted Functional Partners:
lytT
Sensory transduction protein LytT.
 
 0.998
EHI75400.1
Putative antiholin-like protein LrgA.
 
   
 0.867
lrgB
Antiholin-like protein LrgB.
 
   
 0.751
EHI75446.1
Hypothetical protein.
 
 0.690
EHI73684.1
Msm operon regulatory family protein.
  
  
  0.615
EHI73983.1
Hypothetical protein.
 
 0.600
EHI75006.1
Hypothetical protein.
 
 0.596
EHI75049.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
  
 0.544
blpR_1
Response regulator BlpR.
  
 0.544
blpR_2
Response regulator BlpR; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
  
 0.544
Your Current Organism:
Streptococcus criceti
NCBI taxonomy Id: 873449
Other names: S. criceti HS-6, Streptococcus criceti HS-6, Streptococcus criceti str. HS-6, Streptococcus criceti strain HS-6
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