| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rnr | rplP | STRCR_2311 | STRCR_0528 | Ribonuclease R 1 family protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.440 |
| rnr | rpmG | STRCR_2311 | STRCR_2313 | Ribonuclease R 1 family protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.672 |
| rnr | rpsB | STRCR_2311 | STRCR_0225 | Ribonuclease R 1 family protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Putative 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.728 |
| rnr | rpsE | STRCR_2311 | STRCR_0537 | Ribonuclease R 1 family protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.752 |
| rnr | rpsO | STRCR_2311 | STRCR_0107 | Ribonuclease R 1 family protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.815 |
| rnr | rpsR | STRCR_2311 | STRCR_0022 | Ribonuclease R 1 family protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.863 |
| rnr | smpB | STRCR_2311 | STRCR_2310 | Ribonuclease R 1 family protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.913 |
| rplI | rplP | STRCR_0366 | STRCR_0528 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.985 |
| rplI | rplS | STRCR_0366 | STRCR_1957 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.985 |
| rplI | rpmA | STRCR_0366 | STRCR_1702 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.982 |
| rplI | rpmG | STRCR_0366 | STRCR_2313 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.969 |
| rplI | rpsB | STRCR_0366 | STRCR_0225 | 50S ribosomal protein L9; Binds to the 23S rRNA. | Putative 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.985 |
| rplI | rpsE | STRCR_0366 | STRCR_0537 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.973 |
| rplI | rpsO | STRCR_0366 | STRCR_0107 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.975 |
| rplI | rpsR | STRCR_0366 | STRCR_0022 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.992 |
| rplI | smpB | STRCR_0366 | STRCR_2310 | 50S ribosomal protein L9; Binds to the 23S rRNA. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.897 |
| rplP | rnr | STRCR_0528 | STRCR_2311 | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | Ribonuclease R 1 family protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.440 |
| rplP | rplI | STRCR_0528 | STRCR_0366 | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.985 |
| rplP | rplS | STRCR_0528 | STRCR_1957 | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.992 |
| rplP | rpmA | STRCR_0528 | STRCR_1702 | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.987 |
