Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
livFBranched-chain amino acid ABC transporter, ATP-binding protein LivF. (236 aa)    
Predicted Functional Partners:
livM
Branched-chain amino acid ABC transporter, permease protein LivM; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livH
Branched-chain amino acid ABC transporter, permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
livJ
Branched-chain amino acid ABC transporter, amino acid-binding protein LivJ.
 
 
 0.997
livG
Branched-chain amino acid ABC transporter, ATP-binding protein LivG.
 
 
0.996
EHI75337.1
AcuB family protein.
 
    0.662
EHI74313.1
DNA polymerase III, delta' subunit.
   
   0.501
clpP
ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
   
   0.501
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
    0.468
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.465
EHI74326.1
Hydrolase, carbon-nitrogen family.
    
 0.461
Your Current Organism:
Streptococcus criceti
NCBI taxonomy Id: 873449
Other names: S. criceti HS-6, Streptococcus criceti HS-6, Streptococcus criceti str. HS-6, Streptococcus criceti strain HS-6
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