Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHI73680.1Bsp protein. (615 aa)    
Predicted Functional Partners:
EHI73929.1
Hypothetical protein.
     
 0.655
EHI75377.1
Hypothetical protein.
  
 
 0.638
EHI75106.1
Clostridial hydrophobic W repeat family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
     
  0.616
dacA
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
   
 
 0.575
EHI74414.1
Serine-type D-Ala-D-Ala carboxypeptidase.
     
  0.553
EHI74428.1
Bsp family protein.
     
  0.553
EHI74442.1
Hypothetical protein.
  
 
 0.538
pbp2A
Penicillin-binding protein 2A.
    
 0.505
pbp1B
Penicillin-binding protein 1B.
    
 0.505
pbp1A
Penicillin-binding protein 1A.
    
 0.505
Your Current Organism:
Streptococcus criceti
NCBI taxonomy Id: 873449
Other names: S. criceti HS-6, Streptococcus criceti HS-6, Streptococcus criceti str. HS-6, Streptococcus criceti strain HS-6
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