STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
EFU32013.1Putative TIGR00252 family protein; Pfam: PF02021; InterPro: IPR003509; Belongs to the UPF0102 family. (125 aa)    
Predicted Functional Partners:
EFU32012.1
biotin--[acetyl-CoA-carboxylase] ligase; COG: COG0340; Pfam: PF03099; InterPro: IPR004408.
       0.818
comM
Mg chelatase-like protein; COG: COG0606; Pfam: PF01078; InterPro: IPR004482.
 
  
 0.741
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.738
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.676
comF
comF family protein; COG: COG1040.
 
    0.583
EFU32015.1
Hypothetical protein.
       0.539
EFU32014.1
ABC transporter, ATP-binding protein; COG: COG1131; Pfam: PF00005; InterPro: IPR003593.
       0.528
dprA
DNA protecting protein DprA; COG: COG0758; Pfam: PF02481; InterPro: IPR003488.
 
    0.519
EFU32016.1
Hypothetical protein.
       0.502
EFU30467.1
ComEC/Rec2-like protein; COG: COG0658; Pfam: PF03772; InterPro: IPR004477.
  
    0.413
Your Current Organism:
Prevotella buccae
NCBI taxonomy Id: 873513
Other names: P. buccae ATCC 33574, Prevotella buccae ATCC 33574, Prevotella buccae CIP 105106, Prevotella buccae str. ATCC 33574, Prevotella buccae strain ATCC 33574
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