Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFU29177.1 | EFU31835.1 | HMPREF6485_2808 | HMPREF6485_0220 | OmpA family protein; COG: COG2885; Pfam: PF07676,PF00691; InterPro: IPR006665. | Hypothetical protein. | 0.649 |
EFU29177.1 | cinA | HMPREF6485_2808 | HMPREF6485_1758 | OmpA family protein; COG: COG2885; Pfam: PF07676,PF00691; InterPro: IPR006665. | Competence/damage-inducible domain protein CinA; COG: COG1546; Pfam: PF02464; InterPro: IPR008136; Belongs to the CinA family. | 0.741 |
EFU29177.1 | guaA | HMPREF6485_2808 | HMPREF6485_2353 | OmpA family protein; COG: COG2885; Pfam: PF07676,PF00691; InterPro: IPR006665. | GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP. | 0.743 |
EFU29177.1 | guaB | HMPREF6485_2808 | HMPREF6485_1178 | OmpA family protein; COG: COG2885; Pfam: PF07676,PF00691; InterPro: IPR006665. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.629 |
EFU29177.1 | nifJ | HMPREF6485_2808 | HMPREF6485_1741 | OmpA family protein; COG: COG2885; Pfam: PF07676,PF00691; InterPro: IPR006665. | Pyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895. | 0.748 |
EFU30909.1 | EFU31835.1 | HMPREF6485_1112 | HMPREF6485_0220 | Hypothetical protein. | Hypothetical protein. | 0.720 |
EFU31835.1 | EFU29177.1 | HMPREF6485_0220 | HMPREF6485_2808 | Hypothetical protein. | OmpA family protein; COG: COG2885; Pfam: PF07676,PF00691; InterPro: IPR006665. | 0.649 |
EFU31835.1 | EFU30909.1 | HMPREF6485_0220 | HMPREF6485_1112 | Hypothetical protein. | Hypothetical protein. | 0.720 |
EFU31835.1 | EFU31836.1 | HMPREF6485_0220 | HMPREF6485_0221 | Hypothetical protein. | Hypothetical protein; Pfam: PF04224; InterPro: IPR007339. | 0.698 |
EFU31835.1 | cinA | HMPREF6485_0220 | HMPREF6485_1758 | Hypothetical protein. | Competence/damage-inducible domain protein CinA; COG: COG1546; Pfam: PF02464; InterPro: IPR008136; Belongs to the CinA family. | 0.656 |
EFU31835.1 | guaA | HMPREF6485_0220 | HMPREF6485_2353 | Hypothetical protein. | GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP. | 0.645 |
EFU31835.1 | guaB | HMPREF6485_0220 | HMPREF6485_1178 | Hypothetical protein. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.627 |
EFU31835.1 | metH | HMPREF6485_0220 | HMPREF6485_1520 | Hypothetical protein. | Vitamin B12 dependent methionine synthase, activation domain protein; COG: COG1410; Pfam: PF02965; InterPro: IPR004223. | 0.635 |
EFU31835.1 | metH-2 | HMPREF6485_0220 | HMPREF6485_1753 | Hypothetical protein. | 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.635 |
EFU31835.1 | nifJ | HMPREF6485_0220 | HMPREF6485_1741 | Hypothetical protein. | Pyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895. | 0.717 |
EFU31835.1 | rnfB | HMPREF6485_0220 | HMPREF6485_2868 | Hypothetical protein. | Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.633 |
EFU31836.1 | EFU31835.1 | HMPREF6485_0221 | HMPREF6485_0220 | Hypothetical protein; Pfam: PF04224; InterPro: IPR007339. | Hypothetical protein. | 0.698 |
cinA | EFU29177.1 | HMPREF6485_1758 | HMPREF6485_2808 | Competence/damage-inducible domain protein CinA; COG: COG1546; Pfam: PF02464; InterPro: IPR008136; Belongs to the CinA family. | OmpA family protein; COG: COG2885; Pfam: PF07676,PF00691; InterPro: IPR006665. | 0.741 |
cinA | EFU31835.1 | HMPREF6485_1758 | HMPREF6485_0220 | Competence/damage-inducible domain protein CinA; COG: COG1546; Pfam: PF02464; InterPro: IPR008136; Belongs to the CinA family. | Hypothetical protein. | 0.656 |
cinA | guaB | HMPREF6485_1758 | HMPREF6485_1178 | Competence/damage-inducible domain protein CinA; COG: COG1546; Pfam: PF02464; InterPro: IPR008136; Belongs to the CinA family. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.438 |
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