STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFU29557.1Polygalacturonase (pectinase); COG: COG5434; Pfam: PF00295; InterPro: IPR012334; Belongs to the glycosyl hydrolase 28 family. (441 aa)    
Predicted Functional Partners:
EFU30153.1
GDSL-like protein; COG: COG2755; Pfam: PF00657; InterPro: IPR013831.
 
  0.925
rhgT
Rhamnogalacturonan acetylesterase RhgT; COG: COG2755; InterPro: IPR013831.
 
 0.902
EFU30628.1
Pectinesterase; COG: COG4677; Pfam: PF01095; InterPro: IPR012334.
  
  
 0.892
EFU29684.1
Pectinesterase; Pfam: PF01095; InterPro: IPR012334.
  
  
 0.863
EFU31143.1
Hypothetical protein; COG: COG2755; InterPro: IPR013831.
  0.855
EFU31141.1
GDSL-like protein; COG: COG2755; InterPro: IPR013831.
  
  0.824
EFU31145.1
Glycosyl hydrolase family 2, sugar binding domain protein; Pfam: PF02837.
 
 
  0.770
EFU31815.1
Hypothetical protein.
 
     0.760
EFU31201.1
Hypothetical protein.
  
     0.731
EFU31146.1
Glycosyl hydrolase, family 88; Pfam: PF07470; InterPro: IPR010905.
 
    0.698
Your Current Organism:
Prevotella buccae
NCBI taxonomy Id: 873513
Other names: P. buccae ATCC 33574, Prevotella buccae ATCC 33574, Prevotella buccae CIP 105106, Prevotella buccae str. ATCC 33574, Prevotella buccae strain ATCC 33574
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.