STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFU29418.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
EFU29416.1
Hypothetical protein.
       0.802
EFU29415.1
Hypothetical protein.
       0.783
EFU29417.1
Hypothetical protein.
       0.732
rpoD3
Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.590
EFU29312.1
Pyridine nucleotide-disulfide oxidoreductase; COG: COG0446; Pfam: PF07992,PF00070,PF02852,PF00581,PF01206; InterPro: IPR013027; Belongs to the sulfur carrier protein TusA family.
       0.429
htrA
Peptidase Do; COG: COG0265; Pfam: PF00089,PF00595; InterPro: IPR011782.
       0.410
Your Current Organism:
Prevotella buccae
NCBI taxonomy Id: 873513
Other names: P. buccae ATCC 33574, Prevotella buccae ATCC 33574, Prevotella buccae CIP 105106, Prevotella buccae str. ATCC 33574, Prevotella buccae strain ATCC 33574
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.