STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFU29176.1Type I restriction modification DNA specificity domain protein; Pfam: PF01420; InterPro: IPR000055. (160 aa)    
Predicted Functional Partners:
hsdM
N-6 DNA Methylase; COG: COG0286; Pfam: PF02384; InterPro: IPR003356.
 
 
 0.832
EFU29841.1
Helicase C-terminal domain protein; COG: COG4646; Pfam: PF00271.
  
 
 0.750
EFU29786.1
Hypothetical protein; COG: COG4646.
  
 
 0.750
EFU31979.1
Streptopain domain protein; Pfam: PF01640; InterPro: IPR000200.
  
     0.667
hsdR
Putative type-I restriction enzyme; COG: COG4096; Pfam: PF04313,PF04851,PF08463; InterPro: IPR013670.
 
 
 0.626
EFU29800.1
Site-specific recombinase, phage integrase family; COG: COG0582; Pfam: PF00589; InterPro: IPR013762; Belongs to the 'phage' integrase family.
 
     0.617
EFU29168.1
Type I restriction modification DNA specificity domain protein; COG: COG0732; Pfam: PF01420.
 
     0.575
EFU29470.1
Hypothetical protein.
  
     0.507
EFU30672.1
Hypothetical protein.
 
    0.487
EFU30263.1
Hypothetical protein.
  
 
 0.484
Your Current Organism:
Prevotella buccae
NCBI taxonomy Id: 873513
Other names: P. buccae ATCC 33574, Prevotella buccae ATCC 33574, Prevotella buccae CIP 105106, Prevotella buccae str. ATCC 33574, Prevotella buccae strain ATCC 33574
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.