Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEF35007.1ArsR family transcriptional regulator. (123 aa)    
Predicted Functional Partners:
AEF36037.1
GntR family transcriptional regulator.
  
  
 0.667
AEF35006.1
Methyltransferase type 11.
 
   
 0.658
AEF36255.1
Transcriptional regulatory protein.
  
  
 0.613
AEF37601.1
Conserved hypothetical protein.
   
  
 0.567
zur
Zinc uptake regulation protein Zur; Belongs to the Fur family.
 
  
 0.544
AEF35569.1
ArsR family transcriptional regulator.
  
   
 0.540
AEF34228.1
AraC family transcriptional regulatory protein.
   
  
 0.481
AEF36003.1
Transcriptional regulatory protein.
   
  
 0.481
AEF36813.1
Putative transport protein.
  
  
 0.463
fadD31-2
acyl-CoA ligase FadD31.
     
 0.458
Your Current Organism:
Mycolicibacter sinensis
NCBI taxonomy Id: 875328
Other names: M. sinensis, Mycobacterium sinense, Mycobacterium sinov, Mycobacterium sp. 506, Mycobacterium sp. JDM601, strain JDM601
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