AEF35237.1 protein (Mycolicibacter sinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AEF35237.1

Transmembrane ATP-binding protein ABC transporter. (580 aa)

Predicted Functional Partners:

AEF35236.1

0.988

AEF34825.1

0.805

AEF34824.1

0.772

AEF35536.1

0.753

AEF35192.1

0.693

fadD31-2

0.689

lprB

0.615

lprC

0.603

sigE

0.596

AEF37196.1

0.596

Your Current Organism:

Mycolicibacter sinensis

NCBI taxonomy Id: 875328
Other names: M. sinensis, Mycobacterium sinense, Mycobacterium sinov, Mycobacterium sp. 506, Mycobacterium sp. JDM601, strain JDM601

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AEF34824.1	AEF34825.1	JDM601_0824	JDM601_0825	Drug-transport transmembrane ATP-binding protein ABC transporter.	Transmembrane ATP-binding protein ABC transporter.	0.839
AEF34824.1	AEF35192.1	JDM601_0824	JDM601_1192	Drug-transport transmembrane ATP-binding protein ABC transporter.	Antibiotic ABC transporter ATP-binding protein.	0.651
AEF34824.1	AEF35237.1	JDM601_0824	JDM601_1237	Drug-transport transmembrane ATP-binding protein ABC transporter.	Transmembrane ATP-binding protein ABC transporter.	0.772
AEF34824.1	AEF35536.1	JDM601_0824	JDM601_1536	Drug-transport transmembrane ATP-binding protein ABC transporter.	Transmembrane ATP-binding protein ABC transporter.	0.782
AEF34824.1	AEF37196.1	JDM601_0824	JDM601_3196	Drug-transport transmembrane ATP-binding protein ABC transporter.	Transmembrane ATP-binding protein ABC transporter.	0.596
AEF34824.1	fadD31-2	JDM601_0824	JDM601_4077	Drug-transport transmembrane ATP-binding protein ABC transporter.	acyl-CoA ligase FadD31.	0.689
AEF34825.1	AEF34824.1	JDM601_0825	JDM601_0824	Transmembrane ATP-binding protein ABC transporter.	Drug-transport transmembrane ATP-binding protein ABC transporter.	0.839
AEF34825.1	AEF35192.1	JDM601_0825	JDM601_1192	Transmembrane ATP-binding protein ABC transporter.	Antibiotic ABC transporter ATP-binding protein.	0.593
AEF34825.1	AEF35237.1	JDM601_0825	JDM601_1237	Transmembrane ATP-binding protein ABC transporter.	Transmembrane ATP-binding protein ABC transporter.	0.805
AEF34825.1	AEF35536.1	JDM601_0825	JDM601_1536	Transmembrane ATP-binding protein ABC transporter.	Transmembrane ATP-binding protein ABC transporter.	0.784
AEF34825.1	AEF37196.1	JDM601_0825	JDM601_3196	Transmembrane ATP-binding protein ABC transporter.	Transmembrane ATP-binding protein ABC transporter.	0.596
AEF34825.1	fadD31-2	JDM601_0825	JDM601_4077	Transmembrane ATP-binding protein ABC transporter.	acyl-CoA ligase FadD31.	0.689
AEF35192.1	AEF34824.1	JDM601_1192	JDM601_0824	Antibiotic ABC transporter ATP-binding protein.	Drug-transport transmembrane ATP-binding protein ABC transporter.	0.651
AEF35192.1	AEF34825.1	JDM601_1192	JDM601_0825	Antibiotic ABC transporter ATP-binding protein.	Transmembrane ATP-binding protein ABC transporter.	0.593
AEF35192.1	AEF35236.1	JDM601_1192	JDM601_1236	Antibiotic ABC transporter ATP-binding protein.	Transmembrane ATP-binding protein ABC transporter.	0.640
AEF35192.1	AEF35237.1	JDM601_1192	JDM601_1237	Antibiotic ABC transporter ATP-binding protein.	Transmembrane ATP-binding protein ABC transporter.	0.693
AEF35192.1	fadD31-2	JDM601_1192	JDM601_4077	Antibiotic ABC transporter ATP-binding protein.	acyl-CoA ligase FadD31.	0.446
AEF35236.1	AEF35192.1	JDM601_1236	JDM601_1192	Transmembrane ATP-binding protein ABC transporter.	Antibiotic ABC transporter ATP-binding protein.	0.640
AEF35236.1	AEF35237.1	JDM601_1236	JDM601_1237	Transmembrane ATP-binding protein ABC transporter.	Transmembrane ATP-binding protein ABC transporter.	0.988
AEF35236.1	AEF35536.1	JDM601_1236	JDM601_1536	Transmembrane ATP-binding protein ABC transporter.	Transmembrane ATP-binding protein ABC transporter.	0.753