Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEF37003.1Putative cation transporter. (313 aa)    
Predicted Functional Partners:
manA
Mannose-6-phosphate isomerase ManA.
     0.940
manB
Phosphomannomutase PmmA.
  
  
 0.885
AEF37005.1
Conserved hypothetical protein.
       0.876
AEF37002.1
Conserved hypothetical protein.
       0.782
mdh
Malate dehydrogenase Mdh; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
    0.624
AEF37007.1
Conserved hypothetical protein.
       0.614
AEF37008.1
Conserved hypothetical protein.
       0.459
cmk
Cytidylate kinase Cmk.
  
    0.419
AEF34671.1
Alpha-mannosidase.
  
    0.406
Your Current Organism:
Mycolicibacter sinensis
NCBI taxonomy Id: 875328
Other names: M. sinensis, Mycobacterium sinense, Mycobacterium sinov, Mycobacterium sp. 506, Mycobacterium sp. JDM601, strain JDM601
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