Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCJ77705.1Uncharacterised protein. (451 aa)    
Predicted Functional Partners:
guaA
GMP synthase [glutamine-hydrolyzing].
    
 0.751
rsmG
Ribosomal RNA small subunit methyltransferase G.
  
  
 0.573
soj_1
Sporulation initiation inhibitor protein soj.
  
 
 0.572
soj_2
Sporulation initiation inhibitor protein soj.
  
 
 0.572
SCJ88102.1
Septum formation inhibitor-activating ATPase.
  
 
 0.572
SCJ26119.1
Uncharacterized protein with a bacterial SH3 domain homologue.
  
     0.555
SCJ86453.1
SNARE associated Golgi protein.
  
     0.446
SCJ55039.1
Uncharacterised protein.
  
     0.416
Your Current Organism:
uncultured Oscillibacter sp.
NCBI taxonomy Id: 876091
Other names: u. Oscillibacter sp.
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