STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR30056.1COG0642 Signal transduction histidine kinase. (440 aa)    
Predicted Functional Partners:
EAR30057.1
COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
 
   0.886
EAR30060.1
Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein.
 
     0.835
EAR30058.1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
     0.813
EAR28934.1
COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
  
 
   0.736
EAR27203.1
Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein.
 
     0.720
EAR28391.1
Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein.
 
     0.715
EAR27164.1
Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein.
 
     0.698
EAR28387.1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
     0.696
EAR28781.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
 
   0.691
EAR28389.1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
     0.686
Your Current Organism:
Pseudoalteromonas tunicata
NCBI taxonomy Id: 87626
Other names: P. tunicata D2, Pseudoalteromonas sp. D2, Pseudoalteromonas tunicata D2, Pseudoalteromonas tunicata str. D2, Pseudoalteromonas tunicata strain D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.