STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR30325.1COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (237 aa)    
Predicted Functional Partners:
EAR28136.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.766
EAR28853.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.759
EAR27714.1
Hypothetical protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.757
EAR30670.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.756
EAR29256.1
Hypothetical protein.
  
     0.754
EAR29935.1
Hypothetical protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.752
EAR30481.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.749
EAR27557.1
Extracellular solute-binding proteins, family 3 protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.747
EAR28317.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.747
EAR30624.1
Hypothetical protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.723
Your Current Organism:
Pseudoalteromonas tunicata
NCBI taxonomy Id: 87626
Other names: P. tunicata D2, Pseudoalteromonas sp. D2, Pseudoalteromonas tunicata D2, Pseudoalteromonas tunicata str. D2, Pseudoalteromonas tunicata strain D2
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.