STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR30711.1Hypothetical protein. (213 aa)    
Predicted Functional Partners:
EAR30710.1
COG2268 Uncharacterized protein conserved in bacteria.
 
  
 0.972
EAR26870.1
COG1585 Membrane protein implicated in regulation of membrane protease activity.
  
  
 0.602
EAR26424.1
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
 
  
 0.497
EAR30709.1
Hypothetical protein; COG0457 FOG: TPR repeat.
       0.456
PspA
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
  
 0.433
PspA-2
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
  
 0.433
EAR29112.1
Hypothetical protein.
  
    0.428
EAR26423.1
COG3789 Uncharacterized protein conserved in bacteria.
 
  
 0.420
EAR27371.1
Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
      
 0.406
Your Current Organism:
Pseudoalteromonas tunicata
NCBI taxonomy Id: 87626
Other names: P. tunicata D2, Pseudoalteromonas sp. D2, Pseudoalteromonas tunicata D2, Pseudoalteromonas tunicata str. D2, Pseudoalteromonas tunicata strain D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.