STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR28652.1Hypothetical protein. (173 aa)    
Predicted Functional Partners:
GlnL
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL; COG3852 Signal transduction histidine kinase, nitrogen specific.
       0.734
ntrC
DNA-binding transcriptional regulator NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
       0.714
EAR28649.1
COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
       0.660
EAR27009.1
COG1652 Uncharacterized protein containing LysM domain.
  
    0.594
glnA
COG0174 Glutamine synthetase.
       0.558
EAR26745.1
Hypothetical protein.
  
     0.528
PilQ
Putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase); COG4796 Type II secretory pathway, component HofQ.
  
     0.525
PilF
Putative lytic cell-wall binding lipoprotein; COG3063 Tfp pilus assembly protein PilF.
  
     0.521
PilP
Putative Type IV pilus biogenesis protein PilP; COG3168 Tfp pilus assembly protein PilP.
  
     0.515
EAR29235.1
Hypothetical protein.
  
     0.506
Your Current Organism:
Pseudoalteromonas tunicata
NCBI taxonomy Id: 87626
Other names: P. tunicata D2, Pseudoalteromonas sp. D2, Pseudoalteromonas tunicata D2, Pseudoalteromonas tunicata str. D2, Pseudoalteromonas tunicata strain D2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.