node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAR28807.1 | EAR29112.1 | PTD2_07184 | PTD2_08709 | Cold-shock DNA-binding domain family protein; COG3326 Predicted membrane protein. | Hypothetical protein. | 0.544 |
EAR28807.1 | EAR29369.1 | PTD2_07184 | PTD2_11154 | Cold-shock DNA-binding domain family protein; COG3326 Predicted membrane protein. | Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. | 0.549 |
EAR28807.1 | HhoB | PTD2_07184 | PTD2_07189 | Cold-shock DNA-binding domain family protein; COG3326 Predicted membrane protein. | COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. | 0.540 |
EAR28807.1 | rplM | PTD2_07184 | PTD2_07209 | Cold-shock DNA-binding domain family protein; COG3326 Predicted membrane protein. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.469 |
EAR28807.1 | rplO | PTD2_07184 | PTD2_06204 | Cold-shock DNA-binding domain family protein; COG3326 Predicted membrane protein. | 50S ribosomal subunit protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.469 |
EAR28807.1 | rplT | PTD2_07184 | PTD2_20027 | Cold-shock DNA-binding domain family protein; COG3326 Predicted membrane protein. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.509 |
EAR28807.1 | rpmE | PTD2_07184 | PTD2_07519 | Cold-shock DNA-binding domain family protein; COG3326 Predicted membrane protein. | 50S ribosomal subunit protein L31; Binds the 23S rRNA. | 0.478 |
EAR28807.1 | rpmE2 | PTD2_07184 | PTD2_02796 | Cold-shock DNA-binding domain family protein; COG3326 Predicted membrane protein. | COG0254 Ribosomal protein L31. | 0.478 |
EAR28807.1 | rpsL | PTD2_07184 | PTD2_04931 | Cold-shock DNA-binding domain family protein; COG3326 Predicted membrane protein. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.522 |
EAR28807.1 | rpsQ | PTD2_07184 | PTD2_10388 | Cold-shock DNA-binding domain family protein; COG3326 Predicted membrane protein. | 30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.473 |
EAR29112.1 | EAR28807.1 | PTD2_08709 | PTD2_07184 | Hypothetical protein. | Cold-shock DNA-binding domain family protein; COG3326 Predicted membrane protein. | 0.544 |
EAR29369.1 | EAR28807.1 | PTD2_11154 | PTD2_07184 | Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. | Cold-shock DNA-binding domain family protein; COG3326 Predicted membrane protein. | 0.549 |
EAR29369.1 | HhoB | PTD2_11154 | PTD2_07189 | Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. | COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. | 0.661 |
EAR29369.1 | rplM | PTD2_11154 | PTD2_07209 | Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.968 |
EAR29369.1 | rplO | PTD2_11154 | PTD2_06204 | Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. | 50S ribosomal subunit protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.938 |
EAR29369.1 | rplT | PTD2_11154 | PTD2_20027 | Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.782 |
EAR29369.1 | rpmE | PTD2_11154 | PTD2_07519 | Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. | 50S ribosomal subunit protein L31; Binds the 23S rRNA. | 0.430 |
EAR29369.1 | rpmE2 | PTD2_11154 | PTD2_02796 | Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. | COG0254 Ribosomal protein L31. | 0.420 |
EAR29369.1 | rpsL | PTD2_11154 | PTD2_04931 | Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.779 |
EAR29369.1 | rpsQ | PTD2_11154 | PTD2_10388 | Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. | 30S ribosomal subunit protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.941 |